Carol A. Parish
Department of
Chemistry |
Phone: (804) 484-1548 |
|
Fax: (804) 287-1897 |
|
E-mail cparish@richmond.edu |
Professional Experience
Associate
Professor, University of Richmond 2005–
Associate
Professor, Hobart & William Smith Colleges 2003–2005
Visiting
Scientist,
Assistant
Professor,
Founder
and President, Scientific Solutions Inc 1995–1999
Founder
and President, Synchronicity Inc. 1996–1999
Fujitsu
Post-Doctoral Research Fellow,
Education
Ph.
D. Chemistry,
M.
S. Polymer Chemistry,
B.
S. Chemistry,
Awards
2008
2005 Henry Dreyfus Teacher-Scholar Award
Publications (undergraduate student
authors are underlined; corresponding authors are indicated with an asterisk)
1.
“Energetic
Analysis of Chair and Boat Conformations of Maleimide Substituted Cyclohexane
Derivatives,” Sarah Remmert and Carol Parish,* Journal of
Computational Chemistry, in press 2008.
2.
“An Extended Multireference
Study of the Electronic States of para-benzyne,” Evan Wang,
Carol Parish* and
3.
“Synthesis, Spectroscopy
and Theoretical Calculations for a Series of Push-Pull [14]-pyridoannulenes,” Matthew M. Lauer, James W.
Leslie, Ashley Mynar, Shelly A. Stamper,
Anthony D. Martinez, Adrian J. Bray, Senai
Negassi, Kevin McDonald, Eric Ferraris,
Aaron Muzny, Shawn McAvoy, Keith
Walters,* Keith C. Russell,* Evan Wang, Betsy Nuez
and Carol Parish,* Journal of Organic Chemistry, 2008, 73, 474-484.
4.
“Synthesis and Conformational Analysis of
Novel Trimeric Maleimide
Cross-Linking Reagents,” A. Szczepanska,
J. L. Espartero, A. J. Moreno-Vargas, A. T. Carmona, I. Robina,* Sarah
Remmert and Carol Parish,* Journal of Organic
Chemistry, 2007 72, 6776-6785.
5.
“Tuning the Bergman Cyclization
by Introduction of Metal Fragments at Various Positions of the Enediyne. MetallaBergman Cyclizations,”
Edyta M. Brzostowska, Roald
Hoffmann* and Carol Parish, Journal of the
American Chemical Society, 2007 129, 4401-4409.
6.
“Cages, Baskets, Ladders and Tubes;
Conformational Studies of Polyoligomeric Silsesquioxanes,” Sean Hillson,
7.
“A Comparison of the AMBER*, OPLSAA and HF
Potential Energy Surfaces for a Series of Diastereomeric Cyclic Urea HIV–1 Inhibitors,”
8.
“Dicyclobuta[de,ij]naphthalene and Dicyclopenta[cd,gh]pentalene: A Theoretical Study,”
Maximilian Macaluso, Carol Parish,*
9.
“Comparing the Conformational Behavior of a
Series of Diastereomeric Cyclic Urea HIV-1 Inhibitors
Using the Low Mode:
10. “Conformational
Analysis of Siloxane-Based Enzyme-Mimic Precursors,”
Carol Parish,* Martel Zeldin, Jennifer
Pratt and Sean Hillson, Macromolecular
Symposia, Wiley and Sons, 2003 196, 327-336.
11. “Conformational
Analysis and Modeling Studies of Synthetic 4-Dialkylaminopyridine-Siloxane Oligomers with Selective Esterase Activity,” Carol Parish,*
Martel Zeldin and Jennifer Pratt,
Journal of Inorganic and Organometallic Polymers 2002
12(1-2), 31-47.
12. “A
Comparison of the Low Mode and Monte Carlo Conformational Search Methods,”
Carol Parish,* Rosina Lombardi, Kent Sinclair, Emelyn Smith, Alla Goldberg, Melissa Rappleye
and Myrianne Dure,
Journal of Molecular Graphics and Modeling 2002, 21(2)
129-150.
13. "Carbohydrates: United Atom AMBER* Parameterization of Pyranoses and Simulations Yielding Anomeric
Free Energies," Hanoch Senderowitz,
Carol A. Parish and
14. "Three–Body
Analytical Potential for Interacting Helium Atoms," Carol A. Parish and
Clifford E. Dykstra,* Journal of Chemical
Physics 1994, 101, 7618-7624.
15. "A
Partially Coupled Electrical Model of Vibrational
Frequency Shifts in Atom-Diatomic and Diatomic-Diatomic Complexes," Carol
A. Parish and Clifford E. Dykstra,* Journal
of Physical Chemistry 1993, 97, 9374-9379.
16. "Pairwise and Many-Body Contributions to Potentials in
Helium Clusters (Hen)," Carol A. Parish and Clifford E.
Dykstra,* Journal of Chemical Physics
1993, 98, 437-443.
17. "Weakly
Bound Complexes of Carbon Monoxide," Carol A. Parish, Joseph D. Augspurger and Clifford E. Dykstra,* Journal of Physical Chemistry 1992,
96, 2069-2079.
18. "Explorations
on the Multidimensional Potential Energy Surface of a Chiral Stationary
Phase," Kenny B. Lipkowitz,* David A. Demeter, Jo M. Landwer,
Carol A. Parish and Thomas Darden, Journal
of Computational Chemistry 1988, 9, 63-66.
19. "Enantioselective Binding of 2,2,2-Trifluoro-1-(9-Anthryl)Ethanol
on a Chiral Stationary Phase: A Theoretical Study," Kenny B. Lipkowitz,*
David A. Demeter, Carol A. Parish and Thomas Darden, Analytical Chemistry 1987, 59, 1731-1733.
20. "Column
design. 3. Theoretical Studies of a Chiral Stationary Phase Used in Column
Chromatography," Kenny B. Lipkowitz,* David A. Demeter, Carol A. Parish,
Jo M. Landwer and Thomas Darden, Journal of Computational Chemistry
1987, 8, 753-760.
Other Publications
1.
“Undergraduate Research Symposia: A
Review of the MERCURY Conference for Undergraduate Computational Chemistry.”
Carol Parish,* Council on Undergraduate Research Quarterly, 2004 24(3), 140-141.
2.
"Book Review: Reviews in
Computational Chemistry, Volume 14," Carol A. Parish,* Journal of Molecular Graphics and Modeling 2000,
18, 72-73.
3.
"Copolymerization in self-organized
systems," Wilmer K. Fife, Martel Zeldin, Carol A. Parish,* Polymer Preprints 1991, 32,
579.
Manuscripts Under
Review (undergraduate student authors are underlined; corresponding authors are
indicated with an asterisk)
“Conformational
Analysis of Trimeric Maleimide
Substituted 1,5,9-triazacyclododecane HIV Fusion
Scaffolds,” Sarah Remmert and Carol Parish,* submitted to the
Bioorganic and Medicinal Chemistry, August 2008.
Current External Funding
National
Science Foundation Research at Undergraduate Institutions Program, “A Theoretical Investigation of Multireference Diradical Systems,”
2008-2011
The Camille and
Henry Dreyfus Foundation, Henry Dreyfus Teacher-Scholar award, 2005-2010
American Chemical Society Petroleum
Research Fund Type B Program, 2003-2009
The Jeffress Foundation, “Potential
Anti-cancer Warhead Drugs: A Theoretical Investigation of the Electronic Nature
of Enediyne Cyclizations,” 2007-2008 (renewal)
American Chemical Society Petroleum
Research Fund Type SUMR Program, 2007-2008
Anonymous
Foundation, “A Computational Comparison of HIV-1 and
HIV-2,” 2007-2008
National
Science Foundation Major Research Instrumentation Program, “Acquisition
of a Linux Cluster for the Molecular Education and Research Consortium in
Undergraduate Computational ChemistRY (MERCURY),” 2005-2008 (jointly with faculty at
Connecticut, Hamilton, Mount Holyoke, Truman State, Westminster, Rhode Island
and Wooster)
National
Science Foundation Major Research Instrumentation Program, “Acquisition
of a High Performance Computer for the Molecular Education and Research
Consortium in Undergraduate Computational ChemistRY
(MERCURY)”, 2009-2012 (jointly with
faculty at Connecticut, Hamilton, Mount Holyoke, Truman State, Westminster,
Rhode Island, Wheaton, Rhodes, University of Central Arkansas and Queensborough Community College)
Past External Grants
The Jeffress Foundation, “Potential
Anti-cancer Warhead Drugs: A Theoretical Investigation of the Electronic Nature
of Enediyne Cyclizations,” 2006-2007 (renewal)
Anoynmous Foundation,
“A Computational Comparison of HIV-1 and HIV-2,” 2006-2007
National
Science Foundation Research at Undergraduate Institutions Program, “Cycloaromatization of arenediynes,” 2002-2007
(jointly with K.C. Russell at
American Chemical Society Petroleum
Research Fund Type SRF Program, 2005-2006,
National Science Foundation Research
The Jeffress Foundation, “Potential
Anti-cancer Warhead Drugs: A Theoretical Investigation of the Electronic Nature
of Enediyne Cyclizations,” 2005-2006
National Science
Foundation Research Experiences for Undergraduates – Supplement to RUI, “Cycloaromatization of arenediynes,” 2004-2005
The Patchett Foundation, “Summer
Undergraduate Scholars,” 2004-2005,
$10,000
National Science
Foundation Research Experiences for Undergraduates – Supplement to RUI,
“Cycloaromatization of arenediynes,”
2003-2004
American
Chemical Society Petroleum Research Fund Undergraduate Faculty Sabbatical
Program, 2003-2004
The Patchett Foundation, “Summer
Undergraduate Scholars,” 2003-2004
National
Science Foundation Major Research Instrumentation Program, “Acquisition of High Performance Computers
for the Northeastern Undergraduate Research Chemistry Consortium,” 2001-2004 (jointly with faculty at
National
Science Foundation Major Research Instrumentation Program, “Acquisition of an Advanced High
Performance GPC/SEC Instrument for Polymer Characterization,” 2001-2004 (jointly with Christine de
Denus, David Craig, chemistry)
The Patchett Foundation, “Cooperative
Learning in Chemistry II,” 2001-2003
The Council on Undergraduate
Research, Undergraduate Student Summer Research Fellowships in Science,
“Molecular Simulations of HIV Protease Inhibitors,” 2001-2002
The American
Chemical Society Petroleum Research Fund, ‘Type G’,
“Towards a Detailed Understanding of Intermolecular Interactions: Free Energy Simulations on Macromolecular
Systems,” 2000-2004
The Camille and
Henry Dreyfus Foundation, Special
Grant Program in the Chemical Sciences, “Cooperative Learning in Chemistry:
Developing Laboratory Projects that Encourage Teamwork,” 1999-2002
The Patchett Foundation, “Cooperative
Learning in Chemistry: Developing Laboratory Projects that Encourage Teamwork,”
1999-2002, $10,000
The Council on
Undergraduate Research, Undergraduate Student Summer Research Fellowships in
Science, “Molecular Simulations of HIV Protease
Inhibitors,” 1999-2000
Novartis
Pharmaceutical Company, “Conformational Studies of Novel
Inhibitors,” 1998-1999
Institutional
Grant Activity
Howard Hughes
Medical Institute, Undergraduate Science Education
Program, 2008-2012, Contributor (1
of 7 faculty contributors)
Merck-AAAS
Summer Undergraduate Science Research Program, 2007-2010, Contributor (1 of 8 faculty
contributors)
Beckman
Scholars Award, 2005
– 2009, Contributor (1 of 8 faculty contributors)
Merck/AAAS
Undergraduate Science Research Program, 2001-2004, (jointly with Jim Ryan, HWS biology)
Invited Lectures and Workshops
1.
“Title
TBA,”
2.
“Title TBA,”
49th
Sanibel Symposium,
3.
“Molecular
Studies of HIV and Anti-Cancer Drugs,”
Virginia
Tech,
4.
“HIV
Cocktails and Anticancer Warhead Drugs.
What Computational Chemistry Can Tell us About Molecular Behavior,”
5.
“Molecular Studies of HIV and Anti-Cancer
Warhead Drugs,”
6.
“Using
Theoretical and Computational Methods to Understand Molecular Behavior,”
2007
Maryland Conference on Research at Undergraduate Institutions, University of
Maryland, College Park, October 2007
(plenary speaker).
7.
“Minding
the Gap: Variations on the Bergman Theme. Electrocyclizations
of Penta-, Hepta- and Octa-diynes,” Gordon Research
Conference - Physical Organic Chemistry, Holderness School, Plymouth, New
Hampshire June 2007.
8.
“Molecular
Studies of HIV and Anti-Cancer Warhead Drugs,”
9.
“Molecular Pilates:
Determining Drug Behavior and Conformational Flexibility with
MacroModel and XCluster,”
Schrodinger
Global User Summit, New York, NY May 2006 (plenary speaker)
10. Variations
on the Bergman Theme; Quantum Studies of Electrocyclizations”,
11. “A
Molecular Study of Pain, Inhibition and Harry Mosher’s Method”,
12. “The MERCURY Computational Chemistry Consortium”,
2004 American Chemical Society National Meeting,
13. “HIV
Cocktails and Anticancer Warhead Drugs.
What Computational Chemistry Can Tell us About Molecular Behavior”
14. “Conformational
Analysis and Modeling Studies of Siloxane Cages and
Hybrid Organo-Siloxane Oligomers”, International Union
of Pure and Applied Chemistry (IUPAC),
15. “Pain,
Inhibition and Harry Mosher: What
Molecular Modeling Can Tell Us About Chemistry If We Do It Right!”
16. “A
Molecular Study of HIV Protease Inhibitor Drugs” Coastal
17. “Molecular Modeling: Practical Applications from Fundamental
Principles”
18. “Molecular
Modeling: Practical Applications from
Fundamental Principles”
19. “Understanding the Behavior of a Potent HIV-1
Inhibitor: Lessons Learned from a Molecular Modeling Study”
20. “Pain, Inhibition and Mosher Amides” 1999
Schrodinger User Group Meeting,
21. “A
Molecular Study of Pain, Inhibition and Harry Mosher” 4th Annual
Alumni Lecture,
22. “Molecular
Modeling Studies of the Mosher Configurational Model”
1998 Frontiers in Teaching and Research in Chemistry,
23. “Carbohydrates:
AMBER* Parameterization and Simulations Yielding Anomeric
Free Energies” 1998 American Chemical Society National Meeting,
24. “A
Smart Monte Carlo/Stochastic Dynamics Method” 1997 American Chemical Society
National Meeting,
25. “The
Generalized Born/Surface Area Continuum Solvation Model” 1997 American Chemical
Society National Meeting,
26. “Modeling
Biopolymers” CUNY,
27. “MacroModel, A Chemist’s Molecular Modeling Tool.” The National Institutes of Health,
28. “Information
Needs in Academia”, Middle Atlantic Section of the Chemical Information Society
of the American Chemical Society, The Chemists Club,
29. “MacroModel. The Computational Chemist’s Molecular Modeling
Tool.” CombiChem
Inc.,
30. “Molecular
Modeling of Protein–Drug Complexes.” Dupont-Merck Pharmaceuticals,
31. “Molecular
Modeling: Practical Applications from
Fundamental Principles.” Hercules Chemical,
32. “MacroModel. The
Computational Chemist’s Molecular Modeling Tool.” Eli Lilly Pharmaceuticals,
33. “ MacroModel. The Computational Chemist’s Molecular
Modeling Tool.” Dow Elanco,
34. “Molecular
Modeling: Practical Applications from Fundamental Principles.” Cadus Pharmaceuticals,
35. “An
Efficient Method for Calculating Conformational and Relative Binding Free
Energies of Bio–Organic Systems.” Peptidomimetic and Small Molecule Design Conference,
36. “Molecular
Modeling and Drug Design” Amylin Pharmaceutical,
37. “Molecular
Modeling and Drug Design”
Tularik Pharmaceutical,
38. “Molecular
Modeling and Computational Chemistry Workshop”, Universidad Nacional
Autonoma de Mexico,
39. “Weak
Interactions and Electrostatic Effects in Small Molecules.” The Cooper Union
for the Advancement of Science,
Contributed Presentations
1.
2008
American Chemical Society National Meeting,
2.
2007
Southeastern Regional American Chemical Society (SERMACS) Meeting,
3.
2002
American Chemical Society National Meeting,
4.
2000
American Chemical Society National Meeting,
5.
2000
Conference on College Composition and Communication,
6.
1999
American Chemical Society National Meeting,
7.
1996
American Chemical Society National Meeting,
8.
1996
American Chemical Society National Meeting,
9.
1995
American Chemical Society National Meeting,
10. 1995 American Chemical Society National
Meeting,
11. 1994 American Chemical Society National
Meeting,
12. 1994 Sanibel Symposium on Atomic,
Molecular, Condensed Matter Theory, Computational Methods, and Theoretical
Biochemistry,
13. 8th American Conference on Theoretical
Chemistry,
14. 1992 American Chemical Society National
Meeting,
15. 1992 Ohio State International Symposium
on Molecular Spectroscopy, Ohio State University, Columbus, OH, June 1992. “Pairwise And Many-Body Contributions To Dispersion Interaction
Potentials In Hen Clusters.”
(talk)
16. 1991 Midwest Theoretical Chemistry
Conference,
17. 1991 Ohio State International Symposium
on Molecular Spectroscopy, Ohio State University, Columbus, OH, June 1991. “Ab Initio And Model Studies Of Weakly Bonded Clusters Of Carbon
Monoxide.” (talk)
Professional Activities
Invited
Session Chair, Physical Organic Gordon Conference, 2009
National
Science Foundation – panel reviewer, 2008
National
Institute of Health – panel reviewer, 2007
External
Reviewer,
External
Reviewer,
Panel
Chair and reviewer, National Science
Foundation Course Curriculum and Laboratory Improvement Program, 2004
Associate Member, American Chemical Society Women
Chemists Committee, 2001 - 2003
Workshop Participant,
Panel
reviewer, National Science Foundation
Course Curriculum and Laboratory Improvement Program, 2003
Panel
reviewer, Merck/AAAS Summer
Undergraduate Research Program, 2000
Referee,
ACS Petroleum Research Fund, Type G, B
and AC
Referee,
Research Corporation
Referee,
National Science Foundation: Theoretical and
Computational Chemistry, MCB-Cellular
Systems, CAREER, CRIF:MU and RUI programs
Referee,
Council on Undergraduate Research
(CUR) Summer Undergraduate Fellow Program, 2000
Referee,
ACS Women Chemists Committee Travel Awards 2001 - 2003
Reviewer,
Journal of the American Chemical Society
Reviewer,
Journal of Physical Chemistry
Reviewer,
Journal of Organic Chemistry
Reviewer,
Journal of Molecular Graphics and
Modeling
Reviewer,
Inorganic Chemistry
Reviewer,
The New Journal of Chemistry
Reviewer,
Theochem
Reviewer,
Journal
of Chemical Information and Computer Sciences
Reviewer,
Journal of Chemical Theory and Computation
Reviewer,
Journal of Inorganic and Organometallic Polymers
Reviewer,
Theoretica Chimica Acta
Reviewer,
Steroids
Reviewer,
Journal of Chemical Education
Reviewer,
Journal of Molecular Modeling
Reviewer,
Tetrahedron
Reviewer,
Organic Letters
Sponsored Student
Awards - External
American Chemical
Society Scholarship, Kendra Cunningham, 2007, $5,000
Barry M. Goldwater
Scholarship, Evan Wang, 2007 $7,500
Fulbright Scholarship,
Sarah Remmert, 2007
Clarendon Scholarship,
Sarah Remmert, 2007
National Science Foundation Graduate
Research Fellowship, Honorable Mention, Rebecca
Splain, 2007
Gates Scholarship, Max
Macaluso, 2006
Rhodes Scholarship District
Finalist (District III), Max Macaluso, 2006
Marshall Scholarship
Finalist, Max Macaluso, 2006
Barry M. Goldwater
Scholarship, Sarah Remmert, 2006, $7,500
Deutscher Akademischer Austausch Dienst (DAAD)-RISE
Scholarship, Max
Macaluso, 2005
Barry M. Goldwater
Scholarship, Max Macaluso, 2005, $7,500
American Association
for Cancer Research Fellow, Max Macaluso, 2005, $1,500
Xerox Technical
Minority Scholarship,
Marshall Scholarship
Alternate, Rebecca
Splain, 2005
Rhodes Scholarship,
American Chemical
Society Scholarship,
Pfizer Summer
Undergraduate Research Fellowship – Computational Chemistry,
GlaxoSmithKline
Post-Baccalaureate Fellowship, Rebecca Gooch, 2004
American Chemical
Society Scholarship,
Barry M. Goldwater
Scholarship, Julia James, 2003, $7,500
American Chemical
Society Scholarship, Julia James, 2003 $3,000
Merck/United Negro
College Fund Research Scholarship, Julia
James, 2003, $35,000 ($10,000
departmental award).
American Chemical
Society Scholarship, Julia James, 2002, $3,000
Barry
M. Goldwater Scholarship, Jennifer Pratt, 2002, $7,500.
American Chemical
Society Scholarship, Julia James, 2001, $3,000
Sigma Xi Grants-In-Aid
of Research, “Reactivity Ratios of Substituted Vinylpyridinium Ions.” Kristin Schram,
2001, $400.
National
National
Barry
M. Goldwater Scholarship, Rebecca Gooch, 2000, $7,500.
Sponsored Student
Awards - Internal
University of
University of
University of
University of
University of
University of
University of
University of
University of
University of
HHMI –
HHMI –
University of
David C. Evans Award
for Outstanding Achievement in Scholarship, Sarah
Remmert, 2007
Beckman Scholars
Award, Evan Wang, 2007
HHMI –
University of
University of
University of
University of
University of
University of
University of
University of
University of
University of
University of
University of
University of
Beckman Scholars
Award, Sarah Remmert, 2006
HHMI –
Hobart and William
Smith Provost Summer Science Fellowship,
1999
Hobart and William
Smith Provost Summer Science Fellowship,
1998
External Visitors and their Projects
Jeanice Brown,
James River High School/Duke University, Conformational Analysis of HIV-1
Protease Inhibitors, May 06 – present, including 2 full-time summer
fellowships.
Stefanie
Macaluso, Instructor,
Victor Vilchiz,
Assistant Professor, Virginia State University, MD Studies of HIV-1
Protease-POSS Binding, May 06 – Aug 06
Current Undergraduate Research Students
and their Projects
Evan Wang, ’09 Electrocyclizations of Penta- Hepta and Octa-diynes, June 05 –
present, including 4 full-time summer fellowships.
Jacklyn
Lee, ’09 Quantum Studies of Enediynes, January 05 –
present, including 2 full-time summer fellowships.
Heather Hollis,
’09, Quantum Studies of Enediynes, Jan 07 – present,
including 1 full-time summer fellowship.
Gregory
Springsted, ’10 MD Studies of HIV-1 Protease-POSS Binding, August 06 – present,
including 2 full-time summer fellowships.
Tyler Steele,
’10, Energetic Analyses of OdG Base Pairs, Sept 06 –
present, including 1 full-time summer fellowship.
Kendra
Cunningham, ’11, Docking Studies of HIV-1 Protease, July 07 – present, pre-matriculated
HHMI summer scholar and 1 full-time summer fellowship.
Anna Parker,
’11, Energetic Analyses of OdG Base Pairs, Dec 07 –
present, including 1 full-time summer fellowship.
Angela Xie, ’11,
Quantum Studies of Enediynes, January 08 – present,
including 1 full-time summer fellowship.
Jenna
Landers, ’11 Experimental and Theoretical Determination of the Structure of the
Kinesin-1 Light Chain, Jan 08 – present, including 1 full-time summer
fellowship.
Jasmine Major,
’10, Docking Studies of HIV-1 Protease, August 08 – December 08
Research Alumnae and Alumni (40)
2008
Stefan Chipilov,
’08, Kohenen Self-Organizing Maps, Computer
Programmer, Microsoft.
Amy Coan, ’08
Deconstructing Dynemicin.
Jeff Emrich,
’08, O.D. program, Philadelphia College of Osteopathic Medicine.
Shana Middleton,
’08, Quantum Studies of Enediynes and Modeling
Studies of Kinesin-1.
Lindsay Vang,
’08 Quantum Studies of Enediynes.
2007
Sarah Remmert, D. Phil.
Chemistry,
Graduated with Honors in Chemistry
Thesis
Title: A Conformational Analysis of Trimeric Cross-Linking Reagents for HIV-1 gp41 Inhibitors.
2006
Gilberto Arbelaez, M.D. program,
Maximilian
Macaluso, Gates Scholar, Ph.D. in Chemistry,
James Marion,
Ph. D. Biochemistry,
2005
Betsy Nuez
Maxwell Zimmerley, Ph.D. Chemistry,
2004
Julia
James, Rhodes Scholar, D. Phil. HIV-Immunology,
Mathew
Yarger, Ph.D. Chemistry,
Jeffrey Sullivan
Rebecca Splain,
Ph.D. Chemistry,
Graduated with High Honors in Chemistry
Thesis
Title: Conformational Look at
Naturally Occuring Enediyne
AntiCancer Warhead Drugs.
2003
Jennifer
Pratt, Ph.D. Chemistry,
Graduated with High Honors in Chemistry
Thesis Title: Conformational
Analysis of Four Potent HIV Protease Inhibitors:
Kristin
Schram, Ph.D. Chemistry,
Emelyn
Smith, Ph.D. Chemistry,
Graduated with Honors in Chemistry
Thesis Title:
Structural
Analysis of Polyazamacrolides: Determining the Role
of Conformational Flexibility in O-to-N Acyl
Migration.
Sean
Hillson, M.S. Chemical Engineering,
2002
Myrianne
Dure, Chemist,
Yixiu Zheng,
Chemist,
2001
Rebecca
Gooch, M.D.,
Rosina Lombardi, Ph.D. Chemistry, Syracuse University.
Matthew
Nudell, Physicist,
Matthew Pane
Melissa
Rappleye, M.D.,
Kent Sinclair, Pharm.D.,
John Thomas,
Esther
Vivas, M.D.,
Gabriel
Weinstock, software developer, Advanstar Inc.
2000
David
Hindsen, M.D.,
Jamie
Hurlburt,
Theresa
Lyons, Ph.D. Chemistry,
Christopher
Svetcov, Pharm. D.,
John
Unger, Ph.D. Chemistry,
Sharon Wilhelm,
Chemist, Immunogen.
1999
Kenneth Page, chemist at Ultralife
Batteries
Graduated with Honors in Chemistry
Thesis Title:
Computational Analysis of Mu and Delta Opioid
Selective Cyclic Enkephalins.
Anna Manente,
Chemist, ArQule.
Lee Snyder,
Ph.D. Chemistry, SUNY-Buffalo
1998
Alla Goldberg, O.D.,
Robert Hindman,
Chemist, FlavorChem.
Ania Janicka,O.D.,
Jamie
Van Fossan, D.O.,
Sponsored Student Presentations at
Regional, National and International Meetings (Local presentations not listed):
1.
“Stochastic
Dynamics Analysis of Polyoligomeric Silsesquioxane (POSS) as a Potential Inhibitor of the HIV-1
Protease,” 2008 PIRE Symposium,
2.
“Quantum
Mechanical Studies of Five, Seven, and Eight-membered
Enediynes,” 2008 PIRE Symposium,
3.
“Conformational Analysis of a Model for the
Trans-Fused FGH Ether Rings in Brevetoxin A, 2008
Beckman Scholars Conference,
4.
“Configuring
Glide Docking Algorithms using HIV-1 Protease Inhibitors,” 2008 MERCURY
Conference in Computational Chemistry,
5.
“Glide/Ligand Docking of Inverse Designed HIV-1 Protease
Inhibitors,” 2008 MERCURY Conference in Computational Chemistry,
6.
“Experimental
and Computational Modeling of Kinesin Light Chain Tetratricopeptide Repeats,” 2008 MERCURY Conference in
Computational Chemistry, Clinton, NY,
7.
“Quantum
Mechanical Studies of Aromatic Substituted Enediynes,”
2008 MERCURY Conference in Computational Chemistry,
8.
“A
Molecular Dynamics Study of the Structure of a Tetratricopeptide
Repeat Protein,” 2008 MERCURY Conference in Computational Chemistry,
9.
“Energetic
Analysis of Base-Pair Stability and DNA containing 7,8-dihydro-8-oxogaunine,”
2008 MERCURY Conference in Computational Chemistry, Clinton, NY, Tyler Steele, Anna Parker, Michelle
Hamm and Carol Parish
10. “Conformational Analysis
of Selected Substrate Envelope HIV-1 Protease Inhibitors,” 2008 MERCURY
Conference in Computational Chemistry,
11. “Stochastic Dynamics
Analysis of Polyoligomeric Silsesquioxane
(POSS) as a Potential Inhibitor of the HIV-1 Protease,”
2008
Virginia Tech – University of Richmond Theory Summit, Virginia Tech,
Blacksburg, VA, Greg Springsted and
Carol Parish, (talk).
12. “Quantum Mechanical
Studies of Five, Seven, and Eight-membered Enediynes,” 2008
13. “Conformational Analysis
of a Trans-fused Model for the FGH
Ether Rings in Brevetoxin A,” 2008 Schrodinger User
Group meeting,
14. “Stochastic Dynamics
Analysis of Polyoligomeric Silsesquioxane
(POSS) as a Potential Inhibitor of the HIV-1 Protease,” 2008 Schrodinger User
Group meeting,
15. “Energetic analysis of base-pair stability and
DNA containing 7,8-dihydro-8-oxoguanine,” 2008 Schrodinger User Group meeting,
Portland, OR, Tyler Steele, Michelle
Hamm and Carol Parish
16. “Quantum Mechanical
Studies of Five, Seven, and Eight-membered Enediynes,” 2008 American Chemical Society meeting, “Ten
Years of Beckman Scholars in Chemistry” Presidential Event, New Orleans, LA, Evan
Wang and Carol Parish
17. “Docking HIV-1 Protease Inhbitors into the HIV-2 Protease,” 2007 Southeastern
Regional American Chemical Society Meeting (SERMACS),
18. “Modeling the Structure of the Kinesin-1 Light
Chain Protein,” 2007 Southeastern Regional American Chemical Society Meeting
(SERMACS),
19. “Conformational
Analysis of Selected FDA Approved HIV-1 Protease Inhibitors,” 2007 Southeastern
Regional American Chemical Society Meeting (SERMACS),
20. “Conformational Analysis
of the Loop Regions in Kinesin Light Chains,” 2007
Southeastern Regional American Chemical Society Meeting (SERMACS),
21. “Molecular
Dynamics Analysis of Potential Inhibitors of HIV-1 Protease,” 2007 Southeastern
Regional American Chemical Society Meeting (SERMACS),
22. “Quantum Mechanical
Analysis of the Bergman Cyclization of Aromatic Enediynes,” 2007 Southeastern Regional American Chemical
Society Meeting (SERMACS),
23. “Conformational Analysis
of a Trans-fused Model for the FGH
Ether Rings in Brevetoxin A,” 2007 Southeastern
Regional American Chemical Society Meeting (SERMACS),
24. “Docking HIV-1 Protease Inhbitors into the HIV-2 Protease,” 2007 MERCURY Conference
in Computational Chemistry,
25. “Comparing Hierarchial, Agglomerative Clustering
Methods to Clusters Obtained with Kohenen Self-Organzing Maps,” 2007 MERCURY Conference in
Computational Chemistry,
26. “Comparing the Molecular
Properties of HIV-1 Protease Inhibitor Drugs,” 2007 MERCURY Conference in
Computational Chemistry,
27. “Modeling the Structure of
the Kinesin-1 Light Chain Protein,” 2007 MERCURY Conference in Computational
Chemistry,
28. “Conformational
Analysis of Selected FDA Approved HIV-1 Protease Inhibitors,” 2007 MERCURY
Conference in Computational Chemistry,
29. “Conformational Analysis
of the Loop Regions in Kinesin Light Chains,” 2007
MERCURY Conference in Computational Chemistry,
30. “Conformational Analysis
of Novel Trimeric Cross-Linking Reagents,” 2007
MERCURY Conference in Computational Chemistry,
31. “Molecular
Dynamics Analysis of Potential Inhibitors of HIV-1 Protease,” 2007 MERCURY
Conference in Computational Chemistry,
32. “Energetic
analysis of base-pair stability and DNA decamers
containing 7,8-dihydro-8-oxoguanine,” 2007 MERCURY Conference in Computational
Chemistry,
33. “Conformational Analysis
of a Trans-fused Model for the FGH
Ether Rings in Brevetoxin A,” 2007 MERCURY Conference
in Computational Chemistry,
34. “Molecular
Dynamics Analysis of Potential Inhibitors of HIV-1 Protease,” 2007 Virginia
Local Section ACS meeting, University of Virginia, Charlottesville, VA, Greg Springsted and Carol Parish
35. “Conformational Analysis
of Novel Cross-Linking Reagents,” 2007 Beckman Scholars Conference,
36. “Quantum mechanical studies of five,
seven, and eight-membered enediynes,”
2007 Southeastern Theoretical Chemistry Association (SETCA),
Virginia Tech,
37. “Conformational Analysis
of Novel Cross-Linking Reagents,” 2007 Council on Undergraduate Research,
Posters on the Hill Conference,
38. “Conformational Analysis of HIV-1 Protease
Inhibitors,” 2007 American Chemical Society National Meeting,
39. “The Cyclization and Conformational Variations of Kedarcidin
and Neocarzinstatin,” 2007
American Chemical Society National Meeting,
40. “Energetic
analysis of base-pair stability and DNA decamers containing
7,8-dihydro-8-oxoguanine,” 2007 American Chemical Society National
Meeting,
41. “A
Conformational Analysis of HIV gp41 Inhibitors,” 2007
American Chemical Society National Meeting,
42. “Molecular
Dynamics Analysis of Potential Inhibitors of HIV-1 Protease,” 2007
American Chemical Society National Meeting,
43. “A
Study of the Flexibility of Calicheamicin γ1
and Esperamicin
A1,” 2007 American Chemical Society National
Meeting,
44. “Comparing the conformational behavior of a series
of HIV-1 protease inhibitor drugs using the Low Mode:Monte
Carlo conformational search method,” 2007 American Chemical
Society National Meeting,
45. “Minding
the Gap: Variations on the Bergman Theme. Electrocyclizations
of Penta-, Hepta- and Octa-diynes,” 2007 American Chemical
Society National Meeting,
46. “Conformational
Analysis of HIV-1 Protease Inhibitors,” 2006 MERCURY Conference in
Computational Chemistry,
47. “Study
of the Flexibility of FDA Approved HIV-1 Protease Inhibitors,” 2006 MERCURY
Conference in Computational Chemistry,
48. “Cyclization and Conformational Variations of Kedarcidin and Neocarzinstatin,” 2006 MERCURY
Conference in Computational Chemistry,
49. “Analyzing
Conformational Search Results of HIV-1 Protease Inhibitors: Force Field
Analysis,” 2006 MERCURY Conference in Computational Chemistry,
50. “Hydride Shuffle: ab initio Investigations of the Hydride Transfer
Mechanism in Enediyne Keto-Enol
Tautomers,” 2006 MERCURY Conference in Computational
Chemistry,
51. “A
Conformational Analysis of Nicotinamide-Adenine-Dinucleotide
as it relates to a QM/MM Study of Glyoxysomal Malate Dehydrogenase,” 2006
MERCURY Conference in Computational Chemistry, Clinton, NY, Jimmy Marion and Carol Parish
52. “A
Study of the Flexibility of Calicheamicin γ1
and Esperamicin
A1,” 2006 MERCURY Conference in Computational Chemistry,
53. “Simple,
Ten-Membered Rings and the Effects of Aromatic
Addition on the Bergman Cyclization,” 2006 MERCURY
Conference in Computational Chemistry,
54. “Quantum Mechanical Studies of Five, Seven, and Eight-Membered
Enediynes,” 2006 MERCURY Conference in Computational
Chemistry,
55. “Comparing the
Conformational Behavior of a Series of Enediyne
Natural Product Anticancer Agents using the Low Mode:Monte
Carlo Conformational Search Method”, 2004 American Chemical
Society National Meeting,
56. “Comparing the Conformational Behavior of a Series
of HIV-1 Protease Inhibitor Drugs using the Low Mode:Monte
Carlo Conformational Search Method”, 2004 American Chemical
Society National Meeting,
57. “Quantum
Mechanical Studies of Enediyne Tautomers”,
2004 American Chemical Society National Meeting,
58. “A
Theoretical
Investigation of the Electronic Nature of the Bergman Cyclization
in Ten-Membered Enediynes”,
2004 American Chemical Society National Meeting,
59. “Quantum
Mechanical Studies of Substitution Effects in Enediynes”,
2004 American Chemical Society National Meeting,
60. “Conformational
Analysis of Potent HIV-1 Protease Inhibitors and a Comparison of Various Force
Fields and Potential Energy Surfaces for a Series of Diastereomeric Cyclic Urea
HIV-1 Inhibitors”, 2004 MERCURY Conference in Computational Chemistry,
61. “Quantum Mechanic Studies of Simple and Ten-Membered
Enediynes”, 2004 MERCURY Conference in Computational
Chemistry,
62. “Annulation and Annulenes”, 2004 MERCURY
Conference in Computational Chemistry,
63. “Heteroaromatic Substitution and Strain-Driven Effects of the Ene-diyne Bergman Cyclization. A Computational Investigation”, 2004 MERCURY
Conference in Computational Chemistry,
64. “Quantum
Mechanical Analysis of the Effects of Aromaticity on the Rate of Bergman Cyclization of Enediynes”, 2003
MERCURY Conference in Computational Chemistry,
65. “Quantum
Mechanical Studies of Enediyne Anticancer Warhead
Drugs to Determine the Influence of Tautomerization
on Thermal Bergman Cyclization”, 2003 MERCURY
Conference in Computational Chemistry,
66. “Quantum
Mechanical Studies of Enediyne Tautomers”,
2003 MERCURY Conference in Computational Chemistry,
67. “Role of Tautomeric Effects in the Bergman Cyclization
of Ten-Membered Endiynes”, 2003 MERCURY
Conference in Computational Chemistry,
68. “Quantum
Mechanical Study of Heteroaromatic Enediynes”, 2003 MERCURY Conference in Computational
Chemistry,
69. “Quantum
Mechanical Studies of Heteroaromatic Substitution
Effects in Enediynes”, 2003 MERCURY Conference in
Computational Chemistry,
70. “Investigating
the Conformational Flexibility of Saquinavir”, 2003
American Association for the Advancement of Science national meeting, Denver,
CO, Carol Parish and Julia James
71. “Investigating the Conformational Flexibility
of Saquinavir”, 2003 American Chemical Society
National Meeting,
72. “A
Comparison of the Low Mode and Monte Carlo Conformational Search Methods”, 2002
American Chemical Society National Meeting,
73. “Molecular
Modeling and Conformational Analysis of Polyazamacrolides”,
2002 American Chemical Society National Meeting,
74. “Comparing
the Conformational Flexibility of HIV-1 Inhibitors”, 2002 American Chemical Society
National Meeting,
75. “Molecular
Modeling of HIV-1 Protease Inhibitors”, 2002 American Chemical Society National
Meeting,
76. “A
Comparison of the Low Mode and Monte Carlo Conformational Search Methods”, 2002 MERCURY Conference
in Computational Chemistry,
77. “Molecular
Modeling and Conformational Analysis of Polyazamacrolides”,
2002
MERCURY Conference in Computational Chemistry,
78. “Comparing
the Conformational Flexibility of HIV-1 Inhibitors”, 2002 MERCURY Conference
in Computational Chemistry,
79. “Molecular
Simulations of Novel HIV-1 Protease Inhibitors” 2002 New England Science
Symposium,
80. “Molecular
Simulations of Novel HIV-1 Protease Inhibitors”, 2002 Council on Undergraduate
Research (CUR) Capital Hill Poster session, Washington, D.C., Carol Parish and Julia
James
81. “Comparing
The Conformational Behavior Of A Series Of Enantiomeric Cyclic Urea HIV
Inhibitors Using The Low Mode And Monte Carlo Conformational Search Methods”,
2001 American Chemical Society National Meeting,
82. “Molecular
Simulations of Novel HIV Protease Inhibitors”, 2001 American Chemical Society
National Meeting,
83. “Molecular Modeling of HIV Protease
Inhibitors”, 2001 American Chemical Society National Meeting,
84. “Molecular
Modeling and Conformational Analysis of Polyazamacrolides”,
2001 American Chemical Society National Meeting,
85. “Molecular
Modeling and Conformational Analysis of a Neuroactive
Glyconucleoside Isolated from the Funnel Web Spider Hololena Curta”,
2001 American Chemical Society National Meeting,
86. “Comparing
the Conformational Behavior of a Series of Enantiomeric Cyclic Urea HIV
Inhibitors using the Low Mode and Monte Carlo Conformational Search Methods”,
2001 American Chemical Society National Meeting, San Diego, CA, Carol Parish
and Kent Sinclair
87. “Synthesis,
Characterization and Kinetics of N-substituted Vinylpyridinium
Monomers and Polymers”, 2001 American Chemical Society National Meeting,
88. “Molecular
Modeling Studies of the Mosher Configurational
Model”, 2001 American Chemical Society National Meeting,
89. “Theoretical
Investigations of the D9 Desaturase
Structure-Function Relationship”, 2001 American Chemical
Society National Meeting,
90. “Modeling
the 3-D Structure of the Third Loop of the d-Opioid Receptor”, 2001 Council on Undergraduate Research
(CUR) Capital Hill Poster session, Washington, D.C., Carol Parish and Rebecca
Gooch
91. “An
Analysis of the Potential Energy Surfaces of Various HIV-1 Protease
Inhibitors”, 2000 American Chemical Society National Meeting,
92. “Determining
the Molecular Flexibility of HIV-1 Protease Inhibitors”, 2000 American Chemical
Society National Meeting,
93. “Toward
a Molecular Understanding of Enkephalin-Opioid
Receptor Interactions”, 2000 American Chemical Society National Meeting,
94. “Docking
Studies Using the Low Mode Conformational Search Method”, 2000 American
Chemical Society National Meeting,
95. “Using
the Monte Carlo Conformational Search Algorithm to Determine the Molecular
Flexibility of HF-7”, 2000 American Chemical Society National Meeting,
96. “Using
the Low Mode Conformational Search Algorithm to Determine the Molecular
Flexibility of HF-7”, 2000 American Chemical Society National Meeting,
97. “Chemistry
Writing Colleagues”, 2000 American Chemical Society National Meeting,
98. “Docking
Studies using Low Mode Conformational Search Algorithm” 1999 American Chemical
Society National Meeting,
99. “Chemistry
Writing Colleagues: A Systematic Approach for Developing Student Communication
Skills” 1999 American Chemical Society National Meeting,
100.
“Molecular Modeling Studies of HIV
Inhibitors” 1999 Council on Undergraduate Research(CUR) Capital Hill Poster
session, Washington, D.C., Carol Parish and Theresa Lyons
101.
“Conformational Analysis of The Mu-Receptor
Bound Cyclic Enkephalins” 1998 American Chemical
Society National Meeting,
102.
“Computational Design And Evaluation of A
Synthetic Polymeric Transacylation Catalyst” 1998
American Chemical Society National Meeting,
103.
“Molecular Simulations of Novel HIV
Protease Inhibitors” 1998 American Chemical Society National Meeting,
104.
“Molecular Modeling of the V3 Loop of
HIV-1 Gp120” 1998 American Chemical Society National Meeting,
105.
“A Theoretical Study of the Formation of
Grignard Reagents” 1998 American Chemical Society National Meeting,
106.
“A Theoretical Study of Magnesium
Clusters” 1998 American Chemical Society National Meeting,
107.
“Conformational Comparisons of HIV
Protease Inhibitors using MacroModel” 1998 American
Chemical Society National Meeting,
108.
“Conformational Comparisons of Cyclic Ureas” 1998 American Chemical Society National Meeting,
Courses Taught at the
Physical
Chemistry I, Thermodynamics and Kinetics, lecture and laboratory
Physical
Chemistry II, Quantum Mechanics and Molecular Spectroscopy, lecture and
laboratory
Introductory
Chemistry, lecture and laboratory (an accelerated full year introductory course
taught in a single semester)
Courses Taught at
General
Chemistry I, lecture and laboratory
First Year
Seminar: “The Triumph of Discovery” A general education course that
examined the lives, times and works of various Nobel Laureates.
Physical
Chemistry I, Thermodynamics and Kinetics, lecture and laboratory
Physical
Chemistry II, Quantum Mechanics and Molecular Spectroscopy, lecture and
laboratory
Chemistry Senior
Seminar
HHMI
Grant Administrative Committee 2008 – present
HHMI
Undergraduate Fellows Selection Committee, Chair 2005-2008
2008 HHMI Education Program
submission, Steering Committee summer 2007
Chair,
Department of Chemistry Personnel Committee 2006 - present
Common
Ground Action Committee 2005-2007
Chair,
Director of Common Ground search committee 2005-2006
Arts
& Sciences Ad Hoc Travel Committee 2005-2006
Health
Professions Advisory Committee 2005-2007
Women
in Science committee 2005-2006
Hobart and William Smith Committee
Service
Committee
on Tenure and Promotion, 2004-2005
Committee
on the Faculty, Feb – May 2003
Committee
on Global Education, Subcommittee of the Committee on Academic Affairs,
2002-2003
Committee
on Graduate Education in Teaching, 2002
Environmental
Studies Committee, 1997-2005
PreHealth Advisory
Committee, 1998-2005
ACS Student
Affiliates/Chemistry Club advisor, 1997-2000
Chemistry
Department Seminar Coordinator, 1997-2000
Kenan Foundation Visit
Committee, 1998
First
Year Experience Working Group 1998-1999
Committee
on Faculty Research and Honors, Subcommittee of the Committee of the Faculty
1998-1999, 2003
Subcommittee on Programming 1999
HWS
Interdisciplinary Discussion Group, 1999
Search Committee
for HWS Teacher-Scholar in Chemistry, 1998.
Search Committee
for inorganic 1-year chemistry replacement position
Search Committee
for biochemistry sabbatical replacement position
Search Committee
for general chemistry temporary replacement position
Search Committee
for chemistry laboratory instructor position, 1999.
Search Committee
for tenure-track inorganic chemistry position, 2000
Search Committee
for tenure-track organic chemistry position, 2000
Search Committee
for temporary organic chemistry position, 2000
Search Committee
for physical sabbatical replacement position, 2000
Search Committee
for chemistry laboratory instructor position, 2000.
Search Committee
for tenure-track theoretical physics position, 2000
Search Committee
for tenure-track organic chemistry position, 2001
Search Committee
for tenure-track experimental physics position, 2001
Search Committee
for HWS Teacher-Scholar in Chemistry, 2001.
Search Committee
for chemistry laboratory instructor position, 2001.
Search Committee
for chemistry temporary replacement position, 2001.
Search Committee
for tenure-track experimental physics position, 2002
Search Committee
for HWS Teacher-Scholar in Chemistry, 2003
Review I
Committee, Chemistry 2003
Special Review I
Committee, Mathematics and Computer Science 2003
Search Committee
for tenure-track organic chemistry position, 2003
Society Memberships
American
Chemical Society.
Council
on Undergraduate Research (HWS Institutional Liaison, 1999-2003)
Sigma
Xi 1998 – 2006
Academic Fellowships, Graduate and
Undergraduate Honors and Awards
1994
Fujitsu Post – Doctoral Fellow
1993
1992
1991
1990
1989 Eli Lilly Fellowship for Excellence in
Teaching.
1989 Representative
from Chemistry,
1988 Indiana
University-Purdue University at Indianapolis Frank J. Welcher
Award for the graduating senior with the most outstanding professional promise.
1988 Representative
from Chemistry,
1987 Petroleum
Research Fellow Summer Undergraduate Research.
1987 Representative
from Chemistry, Deans Student Advisory Committee.
1987 Vice-President,
1986 ACS
Petroleum Research Fellowship for Summer Support of Undergraduate Research.
1986 President,
Sigma* Chemistry Club (member 1986-1988).